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What’s New in AutoChrom Version 2024

Version 2024 of AutoChrom improves several features, including the optimization of solvent ratios for RPLC. Read below for details, and contact us for help upgrading your software.

Data Import

  • You can now import data from the following formats:
    • MS data from Bruker TIMS TOF (*.tsf)
    • GC data from Shimadzu (*.gcd)
  • We improved data import from:
    • Standard BMRB bioNMR (*.seq and *.bmrb) biosequence structure and assignment data is now transferred to C-H correlation spectra (HSQC and HMQC), in addition to the previous N-H HSQC

Solvent Ratio Optimization Wave for RPLC

You can now optimize the solvent ratio when the strong phase can be represented as a mixture of two predefined solvents. These two predefined solvents can be pure or a mixture.

  • Define possible primary organic phases and use enumeration to select the best pair of solvents
  • Execute optimization using premixed solvents or dynamic mixing of solvents
  • Optimize solvent ratio alone or in conjunction with gradient and temperature
  • Keep track of your decisions from Solvent Screening, Mobile Screening, and the subsequent Solvent Ratio Optimization with improved navigation notes

What's New AutoChrom - Add solvent optimization wave

Add solvent optimization waves in AutoChrom and perform simulation or optimization of Solvent Ratio in LC Simulator using a quadratic model.

What's New AutoChrom - Solvent Ratio

Simulate or optimize the Solvent Ratio in LC Simulator to create a 3D resolution map.

More Easily Screen Solvent Ratios

Dynamically mix ratios of strong solvents without adding additional bottles if using a quaternary pump

OpenLab CDS 2.8 now supported

Execute experiments with the newest version of OpenLab CDS released in 2024

Data Processing

Faster Processing of Unrejected LC/MS Signals

Improvements to IntelliXtract processing to only be applied on unrejected LC/MS signals

Ease of Use Improvements

  • ChemStation users can automatically stop the software from analyzing the data or turn off the pump if the solvent volume falls below a specified value
  • A more intuitive layout makes it easier to adjust instrument operation settings and simplified equilibration calculations
  • Clarity has been added for Experiment Status allowing you to see the number of failed injections
  • Color-coding allows you to see the active wave in the strategy

Improvements to Search Capabilities

Monoisotopic Mass Included in Table of Search Results by Default
  • You can now automatically see the ‘Monoisotopic Mass’ column in the Table of Search Results
New Compensated Offset Spectrum Similarity Search Method for NMR
  • You can now better search for spectra where the query and the hit have very similar multiplet structures, but the peaks are shifted by different amounts. This shift is often seen between spectra recorded at different pHs or temperatures, and can now be accounted for with the new Compensated Offset method of HQI calculation
    What's New Spectrus DB - Method of HQI Calculation
New Approximate Mode for 2D NMR Spectral Search
  • You can now search for 2D NMR spectra without exact peak matches with Approximate Mode
    • Similar to 1D spectra, this search mode ignores the number of peaks existing in the search zones in the query and hits. The HQI is then defined by the ratio of corresponding search zones in the spectra.

Greater Flexibility in Selecting & Visualizing Queried Data

  • You can now see select record information in Filter Tree view. Review filtered data and select the records of interest more quickly. (Previously you had to access individual records to view record information.)What's New Spectrus DB - Filter Tree View
    • Choose the fields you want to be able to see in Filter Tree view (access via the screen forms editor)
      What's New Spectrus DB - Filter Tree View
  • Dynamically visualize only your own records. Create a query to view records for the current logged in user.

Automatic Atom-by-Atom Mapping of Reaction Data for Comprehensive Query Results

You can now comprehensively search reactions or sub reactions for all relevant data. When you search a reaction or sub reaction, atom-mapping is automatically generated for the query and used in the search. (Choose to disable the atom-to-atom matching if/when you need.)

Improved Use of Web Links (URLs)

  • Include weblinks (URLs) in tables
    What's New Spectrus DB - Include URLs in tables
  • Create a link for the current database record and copy it for use in other applications. (DB Read)
    Example link: spectrusdb://%20/connect:localhost:7189,DB:%22Oracle%20DB%22,project:%22TEST%22%20/recid160284

Server-Side Improvements

  • Performance optimization and improvements to the Web REST API
  • Log management is better—choose to archive/delete log files, limit file sizes, and more
  • You may now choose to deny connections to old versions of desktop clients
  • TLS 1.2 protocol is now supported for https Web API calls
  • A new command in the Enterprise Server Management Console (ESMC) Record Sets panel “Refresh Selected Record Sets (F5)” enables you to refresh the status of select record sets
  • The PostgreSQL DB server and ODBC client have been updated to version 15.5-1

As always, you can process data from other analytical techniques in AutoChrom. We’ve improved features for these techniques as well:

Processing MS & Chrom Data with AutoChrom

Improved Display and Reporting of Structures on Chromatographic Traces

  • You now have the option to selectively display structures on chromatographic traces, consolidating information in one place. This feature allows you to control which structures to display and include in reports.
    What's New Spectrus Processor - Display selected structure(s) on chromatographic traces

Display selected structure(s) on chromatographic traces.  

Simplified Analysis with Reoccurring Ions

  • You can now add reoccurring ions to the Component Interpretation Options, allowing you to automatically search and label reoccurring ions when assigning a component
    What's New Spectrus Processor - add reoccurring ions to the Component Interpretation Options

Highlighted ions are those populated in the reoccurring ions tab and are clearly labeled on the spectrum for ease of interpretation. 

Greater Confidence in Identification with Improved MS Match Score

  • You can now include multiply-charged ions and/or modifications into your MS Match score, giving you greater confidence in identification

Improved Features

Improvements in the Use of Internal Standards in Hyphenated Data Sets (LC/UV/MS, GC/MS)
  • You can now calculate relative areas for all components if one component is selected as the internal standard
Easier Export of Components to Excel
  • You now have the option to selectively push results including structure and molecular formulae from the Table of Components to Excel
Improved Accuracy in Area Calculations
  • Using improved peak picking for XICs you can now manually adjust the border and/or baseline of peaks on XIC traces
Improved Efficiency of MS Data Processing
  • You can now use preset options for Profiles to link instruments to specific accuracy, reporting, preferences, and script settings
    • Set known parameters by instrument to minimize errors and improve efficiency
Improved Visualization of MS and UV Spectra
  • You can now more easily review data with fixed positions for UV and MS Spectra
    • Component Spectra are permanently fixed on the left and scan spectra are on the right
Improved Regulatory Compliance

You can easily store and visualize XIC accuracies and identify the accuracy used to extract XICs.

  • Optionally display accuracies in the LC/UV/MS legend, in the chromatogram legend, and appended to the chromatogram name
  • Visualize any accuracy changes in the History Record
  • Store and display XIC accuracy in Spectrus DB, and visualize in reports
Ease of Use Improvements
  • You can access all available options in mass spectral right-click menus at once
  • Quickly restore your zoom with a new hotkey for zoom undo (“U”)

Processing NMR Data with AutoChrom

Option to Define the 1H Range of Multiplets Based on Peaks

  • You now have the option to report the chemical shift range of multiplets based on the outermost peaks in the Multiplet Report Options dialog box, in addition to the boundaries of integration
    What's New Spectrus Processor - Multiplet RangesChoose to report multiplet ranges according to the outermost peaks or the boundaries of the integration—either 1.51–1.60 (m, 1H) for the outermost peaks with the option checked (above), or 1.46–1.63 (m, 1H) according to integration boundary (below).

Display Annotations of 1D Curves in 2D Spectra

  • You now have the option to display the annotations of 1D curves in 2D NMR spectra
    What's New Spectrus Processor - Show or hide the annotations of 1D curves in 2D NMR spectra
    Show or hide the annotations of 1D curves in 2D NMR spectra.

Indication of Peaks Used for qNMR Calculation in Report

  • You can now quickly identify which integrals are used in qNMR calculations with external standards in the Table of Integrals; which can now be included on the title page of the report

Option to Automatically Unfold HSQC Spectra for Structures with Si-CH3 Groups

  • You now have the option to automatically unfold HSQC spectra along the F1 (13C) axis for structures with Si-CH3 This allows aliased peaks that are cut off to be picked properly.
    What's New Spectrus Processor - Automatically unfold HSQC spectra

Automatically unfold HSQC spectra along the F1 for structures with Si-CH3 groups.

Improved Features

New Integral Normalization Method for NMR Spectra
  • You can now more accurately normalize 1H integrals of samples with various impurities with the Allow Excess option
    • This can help prevent false negatives in workflows like Automated Structure Verification (ASV)
      What's New Spectrus Processor - Allow Excess option method
      The Allow Excess option method for 1H integral normalization can avoid under-estimated integrals when impurities are present in the sample, which helps prevent false negative results in ASV.
Perform External Standard Concentration Calculations Without a Sample Structure
  • You now have the option to perform qNMR external concentration calculations in cases where the structure of the sample is not available. Do this by entering the molecular weight of the sample in the Concentration dialog box.
Improved Metrics for External Standard qNMR
  • You can now calculate the relative sample purity by weight (w/w%) automatically with the Concentration Calculation tool
  • You can now include the concentration calibration parameters in your report
Option to Show Only Unique J-Coupling Constants in the NMR Spectral Data Table
  • You now have the option to show only unique coupling constants in the Spectral Data Table Advanced Options menu
    • Instead of reporting a triplet as t(5.25, 5.25), it can now be reported as t(5.25)
Improved Reporting Functionality
  • Ability to manually edit the NMR multiplet report text before copying to the clipboard or generating a report

Want to learn more?

Read more about the full features of AutoChrom, or contact us for help upgrading your software.

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